2024
47
X. Chang, Q. Yang, J. Y. Lee, D. Perumal, F. Zhang*.
Reconfigurable DNA Nanocage for Protein Encapsulation and Regulation.
46
Y. Zhou, G. Pedrielli*, F. Zhang, T. Wu.
Predicting RNA Sequence-Structure Likelihood via Structure-Aware Deep Learning.
45
D. Perumal, Q. Yang, M. Jeziorek, J. Y. Lee, J. Etchegarayb, F. Zhang*.
44.
J. Y. Lee, Q. Yang, X. Chang, M. Jeziorek, D. Perumal, T. R Olivera, J.-P. Etchegaray, F. Zhang*.
Self-assembly of DNA parallel double-crossover motifs
Nanoscale 16, 1685 (2024)
43.
R. P. Narayanan, A. Prasad, A. Buchberger, L. Zou, J. Bernal-Chanchavac, T. MacCulloch, N. E. Fahmi, H. Yan, F. Zhang, M. J. Webber*, N. Stephanopoulos*.
Small 19, 2307585 (2023)
2023
42.
Q. Yang, X. Chang, J. Y. Lee, M. Saji, F. Zhang*.
DNA T-shaped crossover tiles for 2D tessellation and nanoring reconfiguration.
Nature Communications 14, 7675 (2023)
41.
F. Zhang* (2023).
Building with DNA: From Curiosity-Driven Research to Practice.
In: Jonoska, N., Winfree, E. (eds) Visions of DNA Nanotechnology at 40 for the Next 40. Natural Computing Series. Springer, Singapore. Book Chapter.
40.
Y. Tang, H. Liu, Q. Wang, X. Qi, L. Yu, P. Šulc, F. Zhang*, H. Yan*, S. Jiang*.
DNA Origami Tessellations.
Journal of the American Chemical Society 145, 13858 (2023)
2022
D. Fu, P. R. Narayanan, A. Prasad, F. Zhang, D. Williams, J. S. Schreck, H. Yan*, J. Reif*.
Automated Design of 3D DNA Origami with Non-Rasterized 2D Curvature.
Science Advances 8, eade4455 (2022)
R. P. Narayanan, J. Procyk, P. Nandi, A. Prasad, Y. Xu, E. Poppleton, D. Williams, F. Zhang, H. Yan, P-L. Chiu*, N. Stephanopoulos*, P. Šulc*.
Coarse-Grained Simulations for the Characterization and Optimization of Hybrid Protein–DNA Nanostructures.
ACS Nano. 16, 14086 (2022)
J. Lee, Q. Yang, X. Chang, H. Wisniewski, T. R. Olivera, M. Saji, S. Kim, D. Perumal, F. Zhang*.
Nucleic Acid Paranemic Structures: A Promising Building Block for Functional Nanomaterials in Biomedical and Bionanotechnological Applications.
J. Mater. Chem. B. 10, 7460 (2022)
Q. Yang, X. Chang, J. Lee, T. R. Olivera, M. Saji, H. Wisniewski, S. Kim, F. Zhang*.
Recent Advances in Self-Assembled DNA Nanostructures for Bioimaging.
ACS Appl. Bio Mater. 5, 4652 (2022)
S. Dey, A. Dorey, L. Abraham, Y. Xing, I. Zhang, F. Zhang, S. Howorka*, H. Yan*.
A Reversibly Gated Protein-Transporting Membrane Channel Made of DNA.
Nat Communications 13, 1 (2022).
J. Fu, F. Zhang.
Self-Assembly of Nucleic Acids: From Structures to Biomedical Applications.
Curr Top Med Chem. 22, 639 (2022).
X. Chang, Q. Yang, J. Lee, F. Zhang*.
Self-Assembled Nucleic Acid Nanostructures for Biomedical Applications.
Curr Top Med Chem. 22, 652 (2022).
39.
38.
37.
36.
35.
34.
33.
2020
32.
G. Yao†, F. Zhang†, F. Wang, T. Peng, H. Liu, E. Poppleton, P. Šulc., S. Jiang, L. Liu, C. Gong, X. Jing, X. Liu, L. Wang, Y. Liu, C. Fan*, H. Yan*.
Meta-DNA Structures.
Nature Chemistry 12, 1067 (2020).
31.
C. Simmons, T. MacCulloch, F. Zhang, Y. Liu, N. Stephanopoulos*, H. Yan*.
A Self-Assembled Rhombohedral DNA Crystal Scaffold with Tunable Cavity Sizes and High-Resolution Structural Detail.
Angewandte Chemie International Edition 59, 18619 (2020).
30.
S. Jiang, F. Zhang, H. Yan*.
Complex Assemblies and Crystals Guided by DNA.
Nature Materials 19, 694 (2020).
29.
E. Poppleton, J. Bohlin, M. Matthies, S. Sharma, F. Zhang, P. Šulc*.
Design, Optimization, and Analysis of Large DNA and RNA Nanostructures through Interactive Visualization, Editing, and Molecular Simulation.
Nucleic Acids Research 12, e72 (2020).
28.
X. Qi, X. Liu, L. Matiski, R. Del Villar, T. Yip, F. Zhang, S. Sokalingam, S. Jiang, L. Liu, H. Yan*, Y. Chang*.
RNA Origami Nanostructures for Potent and Safe Anti-Cancer Immunotherapy.
27.
X. Fu, F. Peng, J. Lee, Q. Yang, F. Zhang, M. Xiong, G. Kong, H. Meng, G. Ke*, X. Zhang.
Aptamer-Functionalized DNA Nanostructures for Biological Applications.
Topics in Current Chemistry 378, 21 (2020).
Prior to Rutgers
2019
26.
Y. Zhou, X. Qi, Y. Liu, F. Zhang*, H. Yan*.
DNA Nanoscaffold-Assisted Selection of Femtomolar Bivalent Aptamers for Human α-Thrombin with Potent Anticoagulant Activity.
ChemBioChem 20, 2494 (2019).
25.
X. Jing†, F. Zhang†, M. Pan, X. Dai, J. Li, L. Wang, X. Liu, H. Yan*, C. Fan*.
Solidifying Framework Nucleic Acids with Silica.
Nature Protocols 14, 2416 (2019).
24.
C. Su, J. Weir, F. Zhang, H. Yan, T. Wu*.
ENTRNA: A Framework to Predict RNA Folding.
BMC Bioinformatics 20, 373 (2019).
23.
Y. Xu, S. Jiang, C. Simmons, R. Narayanan, F. Zhang, A. Aziz, H. Yan, N. Stephanopoulos*.
Tunable Nanoscale Cages from Self-Assembling DNA and Protein Building Blocks.
ACS Nano 13, 3545 (2019).
22.
H. Jun†, F. Zhang†, S. Ratanalert, T. Shepherd, X. Qi, H. Yan, M. Bathe*.
Autonomously Designed Free-Form DNA Origami.
Science Advances 5, eaav0655 (2019).
2018
21.
X. Qi†, F. Zhang†*, Z. Su†, S. Jiang, D. Han, Y. Liu, W. Chiu, P. Yin, H. Yan*.
Programming Molecular Topologies from Single-Stranded Nucleic Acids.
Nature Communications 9, 4579 (2018).
21.
20.
F. Zhang†, C. Simmons†, J. Gates, Y. Liu, H. Yan*.
Self-Assembly of a 3D DNA Crystal Structure with Rationally Designed Six-Fold Symmetry.
Angewandte Chemie International Edition 130, 12684 (2018).
21.
19.
X. Liu†, F. Zhang†, X. Jing†, M. Pan, P. Liu, W. Li, B. Zhu, J. Li, H. Chen, L. Wang, J. Lin, Y. Liu, D. Zhao, H. Yan, C. Fan.
Complex Silica Composite Nanomaterials Template with DNA Origami.
Nature 559, 593 (2018).
18.
F. Hong, S. Jiang, X. Lan, R. N. Pradeep, P. Sulc, F. Zhang*, Y. Liu*, H. Yan*.
Layered-Crossover Tiles with Precisely Tunable Angles for 2D and 3D DNA Crystal Engineering.
Journal of the American Chemical Society 140,14670 (2018).
2017
17.
D. Han, X. Qi, C. Myhrvold, B. Wang, M. Dai, S. Jiang, M. Bates, Y. Liu, B. An*, F. Zhang*, H. Yan*, P. Yin*.
Single-stranded DNA and RNA Origami.
Science 358, eaao2648 (2017).
16.
F Hong, F. Zhang, Y. Liu, H. Yan.
DNA Origami: Scaffolds for Creating Higher Order Structures.
Chemical Reviews 117, 12584 (2017).
15.
C. Simmons, F. Zhang, T. MacCulloch, N. E. Fahmi, N. Stephanopoulos, Y. Liu, N. Seeman, H. Yan.
Tuning the Cavity Size and Chirality of Self-Assembling 3D DNA Crystals.
Journal of the American Chemical Society 139, 11254 (2017).
14.
F. Zhang, F. Hong, H. Yan.
DNA Origami Tiles: Nanoscale Mazes.
Nature Nanotechnology 12, 189 (2017).
13.
2016
12.
F. Zhang*, S. Jiang, W. Li, A. Hunt, Y. Liu*, H. Yan*.
Self-Assembly of Complex DNA tessellations.
Angewandte Chemie International Edition 55, 8860 (2016).
11.
R. Veneziano, S. Ratanalert, K. Zhang, F. Zhang, H. Yan, W. Chiu, M. Bathe.
Designer Nanoscale DNA Assemblies Programmed from the Top Down.
Science 352, 1534 (2016).
10.
G. Ke, M. Liu, S. Jiang, X. Qi, Y. Yang, S. Wootten, F. Zhang, Z. Zhu, Y. Liu, C. Yang, H. Yan.
Directional Regulation of Enzyme Pathways through the Control of Substrate Channeling on a DNA Origami Scaffold.
Angewandte Chemie International Edition 55, 7483 (2016).
9.
C. Simmons, F. Zhang, J. Birktoft, D. Han, Y. Liu, R. Sha, H. Abdallah, C. Hernandez, Y. Ohayon, N. C. Seeman, H. Yan.
Construction and Structure Determination of a Self-Assembling DNA Crystal.
Journal of the American Chemical Society 138, 10047 (2016).
8.
W. Li, F. Zhang, H. Yan, Y. Liu.
DNA based Arithmetic Function: A Half Adder Based on DNA Strand Displacement.
Nanoscale 8, 3775 (2016).
2015 and before
7.
F. Zhang, S. Jiang, S. Wu, Y. Li, C. Mao, Y. Liu, H. Yan.
Complex Wireframe DNA Origami Nanostructures with Multi-Arm Junction Vertices.
Nature Nanotechnology 10, 779 (2015). Cover Story
6.
X. Ye, F. Zhang, Y. Ma, L. Qi.
Brittlestar-Inspired Microlens Arrays Made of Calcite Single Crystals.
Small 11, 1677 (2015).
5.
F. Zhang, J. Nangreave, Y. Liu, H. Yan.
Structural DNA Nanotechnology: State of the Art and Future Perspective.
Journal of the American Chemical Society 136, 11198 (2014).
4.
K. Pan, D. N. Kim, F. Zhang, M. Adendorff, H. Yan, M. Bathe.
Lattice-free Prediction of Three-dimensional Structure of Programmed DNA Assemblies.
Nature Communications 5, 5078 (2014).
3.
Y. Yang, Z. Zhao, F. Zhang, J. Nangreave, Y. Liu, H. Yan.
Self-assembly of DNA Rings from Scaffold Free DNA Tiles.
Nano Letters 13, 1862 (2013).
2.
F. Zhang, Y. Liu, H. Yan.
Complex Archimedean Tiling Self-assembled from DNA Nanostructures.
Journal of the American Chemical Society 135, 7458 (2013).
1.
F. Zhang, J. Nangreave, Y. Liu, H. Yan.
Reconfigurable DNA Origami to Generate Quasi-Fractal Patterns.
Nano Letters 12, 3290 (2012).
